When you say "out of adjustment", do you mean the doors won't close completely shut. Anytime I installed new weatherstrip, I had to let the doors half latched for a few days till the rubber compressed. Installing new weatherstrip should not of changed the hinge adjustment or alignment on the doors. Be careful trying to close them. I have seen doors bent or buckle because guys were using to much force to try to close them. Also sometimes the new weatherstrip is a thicker bulb than the original.